PutidaNET

DOWNLOAD | HELP | How To Navigate

1. About PutidaNET

PutidaNET is the proteome database of Pseudomonas putida KT2440. P. putida KT2440 is a representative of Pseudomonas putida. Pseudomonas putida is a ubiquitous and a metabolically versatile soil bacterium. Therefore, this strain has been used world-wide for biodegradation research. The genome sequencing was completed in 2002 (Nelson et al. 2002). PutidaNET provides predicted protein-protein interaction, gene ontology information, and physio-chemical information of P. putida KT2440. PutidaNET will be updated with recent experimental data of proteomic and metabolomic analysis.

2. Quick search

2.1 Show list of all proteins registed in PutidaNET.


2.2 Quick search by gene symbol or description or locus tag :

( e.g. HRP, ton )

2.3 Quick search by NCBI gi number or Refseq Name :

for evidence(s) :
( e.g. 26987390, NP_742171.1 )

3. Search by sequence

Notice : It use blastp program to search homology protein sequences that are similar with query sequence you requested.

4. PPIs network viewer

Notice : PPIs network viewer offered.

5. Statistics information

Notice : PPI statistics informations are offered .

6. Functionally categorized tree navigation

Gene Ontology Annotation